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SRX146823: Whole Genome Sequencing
1 ILLUMINA (Illumina HiSeq 2000) run: 5.7M spots, 1.2G bases, 820.7Mb downloads

UUID: 5e1f7293-f587-4e13-b085-b4005a334667
Design: Illumina sequencing of Plasmodium falciparum via random selection
Submitted by: Broad Institute (BI)
Study: Plasmodium falciparum Multi-isolate project for SNP discovery
PRJNA51255 • SRP003502 • All experiments • All runs
show Abstracthide Abstract
We are sequencing 25 strains of Plasmodium falciparum. They will be indexed and pooled: 101 bp PE reads; 35X coverage for SNP discovery. We will be submitting traces and SNP calls.
Sample: Generic sample from Plasmodium falciparum
SAMN00991006 • SRS312016 • All experiments • All runs
Organism: Plasmodium falciparum
Library:
Name: Pond-81767
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
1  forward barcode
Group tagBasecalls
GGTCCAGA
110  reverse

Experiment attributes: (show all 9 attributes...) (hide...)
analysis_type: AssemblyWithReference
gssr_id: 110715.0
library_type: WholeGenomeShotgun
lsid: broadinstitute.org:bsp.prod.sample:22BCC
material_type: DNA:DNA Genomic
project: G14398
root_sample_id: SM-1V7K8
sample_id: SM-22BCC
work_request: 25945
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2011-09-01 00:58:56.0GAPipelineRTA1.12.4.1Sequencer Application 1.4.5
Runs: 1 run, 5.7M spots, 1.2G bases, 820.7Mb
Run# of Spots# of BasesSizePublished
SRR4948155,712,1961.2G820.7Mb2012-05-07

ID:
182677

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